Bioinformatics Facilities and Services
Web-based software written or maintained by the Bioinformatics Team
REDCap – Research Electronic Data Capture system
- Create versatile surveys for wide distribution via email invitation or public websites.
- Create data entry forms
- Store data in secure IRB-approved database that is accessible from any internet-connected computer.
- Easily provide data to biostatisticians for analysis
Contact: REDCap Support
Account Request: Online Form
General Information: Nemours REDCap Site
TimeKeeper – Effort reporting software for employees on externally funded grants
Contact: TimeKeeper Support
Accounts: Provided by OSP for grantees and employees
SNAP – Scientists Network and Profiles
- Maintain full professional profile
- Publications listings supported by automated search
- Import/Export NIH-style biosketches
- Data feeds to upcoming Nemours “Find a Researcher” site
Contact: SNAP Support
Account Request: SNAP Support
PEDSnet CDM
- Research-ready EHR extract
- HIPAA limited dataset
- 1.6 Million patients
- Covers all Nemours sites from 2002 on
Contact: tbunnell@nemours.org
Account Request: bioinf@nemours.org
More Information: Nemours PEDSnet
Special services available from the Bioinformatics Team
Programming
- Web-based applications
- Data management & data manipulation scripts
- Coding in C, Fortran, R, Perl, PHP, javascript, Bash
Data analysis and Data mining
- Microarray data analysis
- Analysis of NextGen sequence data
- Statistical data modeling using Hidden Markov Models and Gaussian Mixture Models.
- EHR extraction and analysis from PEDSnet
Computational facilities for large memory, multi-processor, GPU jobs
Contact: Bioinformatics
Bioinformatics Charges
Access to the web applications listed above and general support is provided free of charge.
Charges apply for the design of REDCap projects and special services.
- For small projects, there is a charge of $100/hour/staff member.
- For large projects, investigators should consider including % effort for Bioinformatics staff in grant budgets
Contact: Bioinformatics